HsaALTA0001701-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr11:64841840-64844569:-
Coord C1 exon
chr11:64844410-64844569
Coord A exon
NA
Coord C2 exon
chr11:64841840-64841884
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCAGCCCCTTCGTATCAAAGGTG
3' ss Score
5.08
Exon sequences
Seq C1 exon
ATGGAGCGGCGGCTGCGCGCGCTGGAGCAGCTGGCGCGGGGCGAGGCCGGCGGCTGCCCGGGGCTCGACGGCCTCCTAGATCTGCTGCTGGCGCTGCACCACGAGCTCAGCAGCGGCCCCCTACGGCGGGAGCGCAGCGTGGCGCAGTTCCTGAGCTGGG
Seq A exon
NA
Seq C2 exon
GTGAAAGAACTGCGTCTGCAGAGAGATGACTTTGAGATCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-0-4,0-3,0-2-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0006920=Pkinase=PU(4.9=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGATCTGCTGCTGGCGC
R:
AAGTCATCTCTCTGCAGACGC
Band lengths:
117-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development