HsaALTA0001803-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180006454-180012075:+
Coord C1 exon
chr1:180006454-180006567
Coord A exon
NA
Coord C2 exon
chr1:180011933-180012075
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CCATGTATTTTTTTAGGTAGTAG
3' ss Score
-2.6
Exon sequences
Seq C1 exon
ATGATATTTCTATAAAGGAGAAACCTGCTGAAAAAAGTAAAGAGAAGAAAGTAGTCAAGCCAGTACGAAAAGTCCAAAAAGTAGCACAGTTATCAAGTACAGAATGCAGAACAG
Seq A exon
NA
Seq C2 exon
TAGTCATCTTATAAGTACATCTTCTTGGCGAGATGGACAAAAATTAGTAAAGAAGATTCTGGGACCTGCTCCCAGAATGGAGCCAAAAGAGCAAAGAACAGCATCAAGTGACAGAGGTGGAAGAGAAAGAACTGCTAAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-20-26,20-25,20-24-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGCCAGTACGAAAAGTCCA
R:
GTCCATCTCGCCAAGAAGATGT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains