HsaALTA0001804-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:24238]
Coordinates
chr1:179955304-179956421:+
Coord C1 exon
chr1:179955304-179955389
Coord A exon
NA
Coord C2 exon
chr1:179956378-179956421
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
ATCATTTTTTTTCCCAGCAGATA
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTAAATTGGCAGGATGAGGAGCAGCAAATCAAAAGAGGTGCCTTTACCAAATCCAAGGAACTCTCAAAGCAAGGATACTGTTCAAG
Seq A exon
NA
Seq C2 exon
ATATAACCACATCGTGGGATGCACTTTCTCAAACCAAGGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837-2-5,2-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123953=DUF3658=FE(17.7=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAAATCAAAAGAGGTGCC
R:
AGCCTTGGTTTGAGAAAGTGCA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)