HsaALTA0001914-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000213719 | CLIC1
Description
chloride intracellular channel 1 [Source:HGNC Symbol;Acc:2062]
Coordinates
chr6:31704039-31704349:-
Coord C1 exon
chr6:31704322-31704349
Coord A exon
NA
Coord C2 exon
chr6:31704039-31704127
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCCGCCTTCCCCGGTCCCAGCCC
3' ss Score
6.91
Exon sequences
Seq C1 exon
CTCCCCAGGTTCAGGGCGGGGCCGGTCG
Seq A exon
NA
Seq C2 exon
CCCCTCCCAGTTCCCCCAGGGACGGCCACTTCCTGGTCCCCGACGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213719-3-5,3-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCCAGGTTCAGGGCG
R:
ACAATTCGACCTGCGGTTGTT
Band lengths:
109-171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)