HsaALTA0002271-1/4 @ hg38
Alternative 3'ss
Gene
ENSG00000138161 | CUZD1
Description
CUB and zona pellucida like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr10:122836831-122837554:-
Coord C1 exon
chr10:122837404-122837554
Coord A exon
NA
Coord C2 exon
chr10:122836831-122836899
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GACTGTCGTGTTGTCTACAGATT
3' ss Score
9.32
Exon sequences
Seq C1 exon
CTATTCCAAACTGTGGCGGTTACCTGGATACCTTGGAAGGATCCTTCACCAGCCCCAATTACCCAAAGCCGCATCCTGAGCTGGCTTATTGTGTGTGGCACATACAAGTGGAGAAAGATTACAAGATAAAACTAAACTTCAAAGAGATTTT
Seq A exon
NA
Seq C2 exon
ATTATGCCAATTCTTACCGGGGATTTTCTGCTTCCTACACCTCAATTTATGCAGAAAACATCAACACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138161-23-17,23-16,23-15,23-14-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(42.2=90.2)
A:
NA
C2:
PF0043115=CUB=PD(56.9=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGGCGGTTACCTGGATA
R:
AGTGTTGATGTTTTCTGCATAAATTG
Band lengths:
210-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains