HsaALTA0002404-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000125485 | DDX31
Description
DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [Source:HGNC Symbol;Acc:16715]
Coordinates
chr9:135505651-135507478:-
Coord C1 exon
chr9:135507428-135507478
Coord A exon
NA
Coord C2 exon
chr9:135505651-135505765
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CGCTCCATCTTCACCTGCAGAAT
3' ss Score
10.57
Exon sequences
Seq C1 exon
GATGTTGCAGCTCGGGGCTTAGATCTCCCTCAAGTCACGTGGATTGTTCAG
Seq A exon
NA
Seq C2 exon
AATACATCCACCGGATTGGAAGAACCGCCCGGATTGGCTGCCATGGGAGCAGCCTGCTCATTTTGGCTCCTTCGGAGGCAGAATATGTCAACTCGTTGGCTTCTCACAAAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125485-24-22,24-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0027126=Helicase_C=FE(21.3=100)
A:
NA
C2:
PF0027126=Helicase_C=PD(15.4=25.6),PF139591=DUF4217=PU(12.2=15.4)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCTTAGATCTCCCTCAA
R:
CGAAGGAGCCAAAATGAGCAG
Band lengths:
113-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)