HsaALTA0002503-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000151240 | DIP2C
Description
DIP2 disco-interacting protein 2 homolog C (Drosophila) [Source:HGNC Symbol;Acc:29150]
Coordinates
chr10:386719-387269:-
Coord C1 exon
chr10:387139-387269
Coord A exon
chr10:386930-386932
Coord C2 exon
chr10:386719-386929
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTGACTTTGACTTTCTGCAGCAG
3' ss Score
6.62
Exon sequences
Seq C1 exon
ATGTCTCACGCAGCCACCAGTGCCTTCTGCCGTTCCATTAAGCTGCAGTGTGAACTTTACCCCTCTAGAGAAGTGGCCATCTGCCTGGACCCTTACTGTGGACTGGGATTTGTCCTCTGGTGCCTCTGCAG
Seq A exon
CAG
Seq C2 exon
GGAAGGAGCATTTTGGAGAGCCGTCTGTTGCGGACCTTTATTTCTGACAATCAGAAGACTCCCAGGCTCCAGGCTTGGTTCTTATGCCTGTAAAACCTGGCGATGGTGCTGGGCCTGGGTTCTCGCTGGGCCAGCAGGCATTGCAGGCTGTCACCTCCCTCAGGCTTCACCCCAGCTGTTACTGCGGGGCTTAGGCTGGGCAAGCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151240-36-38,36-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.3=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGATTTGTCCTCTGGTGC
R:
GGAGCCTGGGAGTCTTCTGAT
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)