HsaALTA0002576-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000106976 | DNM1
Description
dynamin 1 [Source:HGNC Symbol;Acc:2972]
Coordinates
chr9:131013004-131016441:+
Coord C1 exon
chr9:131013004-131013219
Coord A exon
NA
Coord C2 exon
chr9:131016288-131016441
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCTTCTGCTTTTCCCAGCAGGAA
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTCGCCCACGTCCAGCCCCACGCCGCAGCGCCGAGCCCCCGCCGTGCCCCCAGCCCGGCCCGGGTCGCGGGGCCCTGCTCCTGGGCCTCCGCCTGCTGGGTCCGCCCTGGGGGGGGCGCCCCCCGTGCCCTCCAGGCCGGGGGCTTCCCCTGACCCTTTCGGCCCTCCCCCTCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAG
Seq A exon
NA
Seq C2 exon
GAAGGGCCCAGCCTCACCTACGAGACCTGCAGCCCCCCGACCAGCTGAGGCTCCCCTCTTAGACTTATAAGTCTATGGCCACTGGCATCCGGCTGCCTGCCCTCCCTGCCTCCCCCAGGGTCCCTTCAGAGGGTCCTGGGTTTTCTGAACACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106976-32-36,32-35-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCCTGACCCTTTCG
R:
CAGGTCTCGTAGGTGAGGCTG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)