HsaALTA0002927-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000188833 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:HGNC Symbol;Acc:HGNC:24860]
Coordinates
chr9:137436869-137437309:-
Coord C1 exon
chr9:137437159-137437309
Coord A exon
NA
Coord C2 exon
chr9:137436869-137436990
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GGCCAGGGACATCTTTGCAGCAG
3' ss Score
-0.18
Exon sequences
Seq C1 exon
GGCCTGGAATCTCCTCCTACACTTCTAATGCTGCACAGGCTGGTGAGAGCCTGCAGGGCTGCTTGGAGGAGGCGCTGGTGCTGATCCCAGAGGCCCAGCATCGGAAAACACCCACGTTCCTGGGGGCCACGGCTGGCATGAGGTTGCTCAG
Seq A exon
NA
Seq C2 exon
CAGTCACCCAGGTCCTGGGCCGGTCTCCCGTGGACTTTTGGGGTGCCGAGCTCCTGGCCGGGCAGGCCGAAGGTGCCTTTGGTTGGATCACTGTCAACTACGGCTTGGGGACGCTGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188833-6-8,6-7,6-6-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(15.5=100)
A:
NA
C2:
PF0115012=GDA1_CD39=PD(3.9=9.5)


Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCATGAGGTTGCTCAG
R:
AGTGATCCAACCAAAGGCACC
Band lengths:
112-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains