HsaALTA0002941-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000120616 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:19876]
Coordinates
chr10:32634320-32636146:-
Coord C1 exon
chr10:32635691-32636146
Coord A exon
NA
Coord C2 exon
chr10:32634320-32634490
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTACGT
5' ss Score
10.06
3' ss Seq
TTGCATACCTTGGTTTTCAGGTA
3' ss Score
8.17
Exon sequences
Seq C1 exon
GCGTGCCCGCGCCGCTGCGCGATGCAGTGTGGGGAATGGCTGGGGTTGGCTGAAGAGCGCACAGTGGAGTTTTAATGTCCGCCATGTTGGCCATGGCGTATTGAAGAGAGCGAGCGAGAGAGGAGCGGAGCGGCACAGCCTCCCACCCTCCCGGCTGGTGTTAGTGCCCGGACGGCGGGCTCTGCGCTCCGCCCCTCAAGTCCCCGGCAGCGGTTGGCGAGTGGGGACCGAACCCCCGGTTCTCCATGATCCCGCTGGCCGGGGCCGTTTCCCCAGAGCGGAGAGGTATCTGCTGCGCCTGAGATGAGTAAACTGTCGTTTCGGGCGCGGGCGCTAGACGCCTCGAAGCCGCTGCCGGTTTTCCGCTGTGAGGATCTGCCCGACCTGCACGAATACGCCTCGATAAACAGGGCCGTGCCGCAGATGCCCACCGGAATGGAGAAGGAAGAGGAGTCG
Seq A exon
NA
Seq C2 exon
GTACAGCCATTTAAACAGGGTGCAGTGTATTGACAGTTCAAGGAAGTCCAGGAGTCGCGTGGATTTGTGTGCTACAATTTTGTTGTGGAAAATTGTACTGTAATACTTCTCTTGGTACTGTAAGAATTTTTAATGTAGAAATTATGCTCTGTAATGTTGTTTTTGGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120616-2-6,2-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF105134=EPL1=PU(31.2=88.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACGAATACGCCTCGATA
R:
TAGCACACAAATCCACGCGAC
Band lengths:
146-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)