HsaALTA0003134-2/3 @ hg19
Alternative 3'ss
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166, member B [Source:HGNC Symbol;Acc:34242]
Coordinates
chr9:35562377-35562697:-
Coord C1 exon
chr9:35562646-35562697
Coord A exon
chr9:35562504-35562525
Coord C2 exon
chr9:35562377-35562503
Length
22 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CGCTTCCTCTTCGGCTCCAGCTT
3' ss Score
6.97
Exon sequences
Seq C1 exon
GCTTCTCCCTACTCCATGGATGACAGGGACCCTCGGAAGTTCTTCATGTCAG
Seq A exon
CTTTCCTGTGCTCACCAACCAG
Seq C2 exon
GCACTGCAGGAATTTGGGCAGAAGCACTCACCAGGCAGTGCCCAGGACCCCAAACATCTCCCCCCACTTCCCAGAACATACCCTCAGAACCTGGGTCTTTTACCTAACTATGGGGGCTACGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187-3-8,3-7,3-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.535
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(8.5=27.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACCCTCGGAAGTTCTTC
R:
GTATGTTCTGGGAAGTGGGGG
Band lengths:
109-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)