HsaALTA0003134-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166 member B [Source:HGNC Symbol;Acc:HGNC:34242]
Coordinates
chr9:35562404-35562700:-
Coord C1 exon
chr9:35562649-35562700
Coord A exon
chr9:35562507-35562528
Coord C2 exon
chr9:35562404-35562506
Length
22 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CGCTTCCTCTTCGGCTCCAGCTT
3' ss Score
6.97
Exon sequences
Seq C1 exon
GCTTCTCCCTACTCCATGGATGACAGGGACCCTCGGAAGTTCTTCATGTCAG
Seq A exon
CTTTCCTGTGCTCACCAACCAG
Seq C2 exon
GCACTGCAGGAATTTGGGCAGAAGCACTCACCAGGCAGTGCCCAGGACCCCAAACATCTCCCCCCACTTCCCAGAACATACCCTCAGAACCTGGGTCTTTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187-8-15,8-14,8-13,8-12-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.603
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(8.5=27.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACCCTCGGAAGTTCTTC
R:
GTATGTTCTGGGAAGTGGGGG
Band lengths:
109-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains