HsaALTA0003419-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000115414 | FN1
Description
fibronectin 1 [Source:HGNC Symbol;Acc:HGNC:3778]
Coordinates
chr2:215372270-215373411:-
Coord C1 exon
chr2:215373322-215373411
Coord A exon
chr2:215372301-215372375
Coord C2 exon
chr2:215372270-215372300
Length
75 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTCTAACCTCTCTCGGCTAGACG
3' ss Score
4.08
Exon sequences
Seq C1 exon
GCCTGGAACCGGGAACCGAATATACAATTTATGTCATTGCCCTGAAGAATAATCAGAAGAGCGAGCCCCTGATTGGAAGGAAAAAGACAG
Seq A exon
ACGAGCTTCCCCAACTGGTAACCCTTCCACACCCCAATCTTCATGGACCAGAGATCTTGGATGTTCCTTCCACAG
Seq C2 exon
TTCAAAAGACCCCTTTCGTCACCCACCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115414-102-119,102-118,102-117,102-115-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=NA C2=0.927
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(27.2=71.0)
A:
NA
C2:
PF0004116=fn3=PU(9.0=10.8)
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACCGAATATACAATTTATGTCA
R:
CCAGGGTGGGTGACGAAAG
Band lengths:
111-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains