HsaALTA0003430-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000187239 | FNBP1
Description
formin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17069]
Coordinates
chr9:129923844-129925157:-
Coord C1 exon
chr9:129924960-129925157
Coord A exon
NA
Coord C2 exon
chr9:129923844-129923939
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTGTTCCCAACGGCCCCCAGTCT
3' ss Score
5.15
Exon sequences
Seq C1 exon
GATTCACAGCTGGTAATAGAAGCTTATAAATCAGGGTTTGAGCCTCCTGGAGACATTGAATTTGAGGATTACACTCAGCCAATGAAGCGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAACCAGACCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCGTTCATCAAAAAAAATAAG
Seq A exon
NA
Seq C2 exon
TCTCCCAAGCAGCAAAAGGAACCCCTCTCCCATCGCTTCAACGAGTTCATGACCTCCAAACCCAAAATCCACTGCTTCAGGAGCCTAAAGCGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187239-34-47,34-46,34-45-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=0.735
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAAGCGCACTGTGTCAGA
R:
GAGGGGTTCCTTTTGCTGCTT
Band lengths:
145-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains