HsaALTA0003722-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000147533 | GOLGA7
Description
golgin A7 [Source:HGNC Symbol;Acc:24876]
Coordinates
chr8:41348001-41348484:+
Coord C1 exon
chr8:41348001-41348136
Coord A exon
chr8:41348352-41348388
Coord C2 exon
chr8:41348389-41348484
Length
37 bp
Sequences
Splice sites
5' ss Seq
CGGGTTTGT
5' ss Score
3.45
3' ss Seq
GTGTTCCCCCGACCCCGCAGCGC
3' ss Score
9.3
Exon sequences
Seq C1 exon
TTTACGGCCGGAGGAGAGGGTGGGTCCCAGACCTGAGGTAGGAGGCCGAGCTGAGGGGCGGGGAAGAGGCTTTTTGCGGCAGGACGTAAGTGACGGCGAAGGCGGTGCGACAGCAGCTGGAGGGCAGAGGAGGCGG
Seq A exon
CGCGGGGTGTCCTGTCCTCGCCATGAGGCCGCAGCAG
Seq C2 exon
GCGCCGGTGTCCGGAAAGGTGTTCATTCAGCGAGACTACAGCAGTGGCACACGCTGCCAGTTCCAGACCAAGTTCCCTGCGGAGCTGGAGAACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147533-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF102564=Erf4=PU(22.8=70.3)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTTGCGGCAGGACGTAAG
R:
GTGTGCCACTGCTGTAGTCTC
Band lengths:
119-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)