HsaALTA0003723-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000175265 | GOLGA8A
Description
golgin A8 family, member A [Source:HGNC Symbol;Acc:31972]
Coordinates
chr15:34683324-34683627:-
Coord C1 exon
chr15:34683554-34683627
Coord A exon
NA
Coord C2 exon
chr15:34683324-34683463
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCAA
5' ss Score
1.19
3' ss Seq
ATTTTTTGTATTTTTAGTAGAGA
3' ss Score
3.25
Exon sequences
Seq C1 exon
ATGATGTCTCACTCTGTCACCCAAGATGGAGTGCAATGGCACGATCTCAGCTCACTGCAACCTCTGCCTCCCAG
Seq A exon
NA
Seq C2 exon
AGACGGGGTTTCACCATGTTGGGCAGGCTAGTCTTGGAACTACTGACCTCAGGTGATCCGCCCACTTTGGCCTCCCGAAAGTGCTGGGATTACAGTCATGAGCCACCATGCCCAGCCTATTTATTTCTGATTCTTTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175265-6-7,6-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCACCCAAGATGGAGTGC
R:
TTCCAAGACTAGCCTGCCCAA
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)