HsaALTA0003754-2/4 @ hg19
Alternative 3'ss
Gene
ENSG00000125734 | GPR108
Description
G protein-coupled receptor 108 [Source:HGNC Symbol;Acc:17829]
Coordinates
chr19:6731004-6731293:-
Coord C1 exon
chr19:6731210-6731293
Coord A exon
chr19:6731059-6731065
Coord C2 exon
chr19:6731004-6731058
Length
7 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCACGGGCTACAAGTTCCAGCCC
3' ss Score
-4.07
Exon sequences
Seq C1 exon
GTCATCTGCTACGTCTACTTCACCCGCATCATCGCCATCCTGCTGCAGGTGGCTGTGCCCTTTCAGTGGCAGTGGCTGTACCAG
Seq A exon
CCCACAG
Seq C2 exon
GAAACAACCCGTACCTGCAGCTGCCCCAGGAGGACGAGGAGGATGTTCAGATGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125734-17-20,17-19,17-18,17-17-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(10.3=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=PD(25.3=57.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTACTTCACCCGCATCA
R:
GCTGCAGGTACGGGTTGTTTC
Band lengths:
95-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)