HsaALTA0003895-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000132702 | HAPLN2
Description
hyaluronan and proteoglycan link protein 2 [Source:HGNC Symbol;Acc:17410]
Coordinates
chr1:156589086-156589950:+
Coord C1 exon
chr1:156589086-156589327
Coord A exon
chr1:156589761-156589809
Coord C2 exon
chr1:156589810-156589950
Length
49 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGCTTCTTCTTTGAGCACAGGAC
3' ss Score
1.81
Exon sequences
Seq C1 exon
TTGCCATTACCCACAGAATAAAGAAAGGGGCCCTGTTATTCAACAATAGGGGAAAAGACAGAGACAATGGGAAATTGTGCTTCCGATGGGGTGGGGACTGAGAAGGAAAGGACAGACAGACAGACAGACAGGGGGTTGTACAGAAGAGGTCCGGTTTCTTGAAGCAGCTGGAAGTCCTGGATAGTTCCCACCTGAAAGTCTGTTTGCAAAGGCAATGCGCACTCAGGCACCAGAGGGCAGAG
Seq A exon
GACAGAAGCTTTTCCTCAAAGGTGCAAAAGGAGCAACTGTGTTGAACAG
Seq C2 exon
GGGCTCAAGTTCCAGGGTTTTAAGGTGCTTGGAACTCCCAGGAGCCTGGCAAACCTTCATCCAGAACCTCTTCCTCAAGCAAGACAAAAAGCTGCTAAGCACTGCTCCCTCCGTCTCTGTGAAGAGACCAGCTTCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132702-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGACAGACAGGGGGTTG
R:
AAAACCCTGGAACTTGAGCCC
Band lengths:
146-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)