HsaALTA0003895-8/9 @ hg38
Alternative 3'ss
Gene
ENSG00000132702 | HAPLN2
Description
hyaluronan and proteoglycan link protein 2 [Source:HGNC Symbol;Acc:HGNC:17410]
Coordinates
chr1:156619294-156620158:+
Coord C1 exon
chr1:156619294-156619535
Coord A exon
chr1:156619969-156620100
Coord C2 exon
chr1:156620101-156620158
Length
132 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GGCTTCTTCTTTGAGCACAGGAC
3' ss Score
1.81
Exon sequences
Seq C1 exon
TTGCCATTACCCACAGAATAAAGAAAGGGGCCCTGTTATTCAACAATAGGGGAAAAGACAGAGACAATGGGAAATTGTGCTTCCGATGGGGTGGGGACTGAGAAGGAAAGGACAGACAGACAGACAGACAGGGGGTTGTACAGAAGAGGTCCGGTTTCTTGAAGCAGCTGGAAGTCCTGGATAGTTCCCACCTGAAAGTCTGTTTGCAAAGGCAATGCGCACTCAGGCACCAGAGGGCAGAG
Seq A exon
GACAGAAGCTTTTCCTCAAAGGTGCAAAAGGAGCAACTGTGTTGAACAGGGGCTCAAGTTCCAGGGTTTTAAGGTGCTTGGAACTCCCAGGAGCCTGGCAAACCTTCATCCAGAACCTCTTCCTCAAGCAAG
Seq C2 exon
ACAAAAAGCTGCTAAGCACTGCTCCCTCCGTCTCTGTGAAGAGACCAGCTTCTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132702-0-9,0-8,0-7,0-6,0-5,0-4,0-3,0-2,0-1-8/9
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCCCTGTTATTCAACAA
R:
CTTCACAGAGACGGAGGGAGC
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains