HsaALTA0004031-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000204632 | HLA-G
Description
major histocompatibility complex, class I, G [Source:HGNC Symbol;Acc:4964]
Coordinates
chr6:29795824-29796491:+
Coord C1 exon
chr6:29795824-29796093
Coord A exon
chr6:29796320-29796393
Coord C2 exon
chr6:29796394-29796491
Length
74 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GACCGAGGGGGTGGGGCCAGGTT
3' ss Score
-2.66
Exon sequences
Seq C1 exon
GCTCCCACTCCATGAGGTATTTCAGCGCCGCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCATGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACTCGGCGTGTCCGAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGAAGAGGAGACACGGAACACCAAGGCCCACGCACAGACTGACAGAATGAACCTGCAGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCA
Seq A exon
GTTCTCACACCCTCCAGTGGATGATTGGCTGCGACCTGGGGTCCGACGGACGCCTCCTCCGCGGGTATGAACAG
Seq C2 exon
TATGCCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACTGCGGCTCAGATCTCCAAGCGCAAGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204632-2-7,2-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(90.9=98.9),PF031489=Tektin=PU(94.0=69.2)
A:
NA
C2:
PF0012913=MHC_I=PD(49.2=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGACACGGAACACCAA
R:
ACTTGCGCTTGGAGATCTGAG
Band lengths:
183-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)