HsaALTA0004058-4/7 @ hg38
Alternative 3'ss
Gene
ENSG00000122566 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:HGNC:5033]
Coordinates
chr7:26193644-26196481:-
Coord C1 exon
chr7:26196401-26196481
Coord A exon
chr7:26193653-26193675
Coord C2 exon
chr7:26193644-26193652
Length
23 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGTGGCAATTTTGGAGGTAGCCC
3' ss Score
-4.24
Exon sequences
Seq C1 exon
GCAACTTTGGCTTTGGGGATTCACGTGGTGGCGGTGGAAATTTCGGACCAGGACCAGGAAGTAACTTTAGAGGAGGATCTG
Seq A exon
CCCCGGTTATGGAGGAGGAAGAG
Seq C2 exon
GAGGATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122566-23-34,23-33,23-32,23-31,23-30,23-29,23-27-4/7
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains