HsaALTA0004089-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000108511 | HOXB6
Description
homeobox B6 [Source:HGNC Symbol;Acc:5117]
Coordinates
chr17:46675573-46682274:-
Coord C1 exon
chr17:46681842-46682274
Coord A exon
chr17:46675591-46675622
Coord C2 exon
chr17:46675573-46675590
Length
32 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACCTCGCCATCCCCCCTCAGCTA
3' ss Score
6.85
Exon sequences
Seq C1 exon
ACTTCAGTATCAGCTCGATAGAGCAAAAGAGAGAGAGGACGAGAGAGGGGGGTGAGGAGAAAAGAGAGAGAGCGCGAGAGGGAGAGGGAGAGAAGGAGGGGTGGGAATTACACAAAGAGAGAACCAAAAATAATTTTGATTCCTAAGTTAATTTGCTCACTGATCTGGGATTTTAGTCACCATGGAGGGTAAATGGACAATCTGCCCAGGACTGCAGCCCGATACTATTTTTCAAAGCCAGAACTTACTCCATTTTCTATGCAAATGTCAGAAAAATGAAACACCCTCTCTCCCAAGTCAGAGAAGGGGAAGCAACGGCTCTCACGTTGGGACAATATTATCTGGAAGCTGAAGAAGAAACTGAATACTCCTTCCTTCCTCCCCACCCATTCCTTTAAATCCGGAGGGGGAAAAAATCCCAAGGTCTGCAAAG
Seq A exon
CTAAAACCCAATCTCGGATATACTACTAATAG
Seq C2 exon
GCGCGGCGCTCGGACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108511-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.302
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)