HsaALTA0004464-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000162687 | KCNT2
Description
potassium channel, subfamily T, member 2 [Source:HGNC Symbol;Acc:18866]
Coordinates
chr1:196311209-196342378:-
Coord C1 exon
chr1:196342270-196342378
Coord A exon
chr1:196311359-196311379
Coord C2 exon
chr1:196311209-196311358
Length
21 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TTCTTTTTGTGTGTGTGTATGTG
3' ss Score
1.84
Exon sequences
Seq C1 exon
ATCATGTTGTTTGTGAAGAAGAGTTTAAATACGCCATGTTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCA
Seq A exon
GTGTGTGTGCCTGTGTTGCAG
Seq C2 exon
AGAAGGCCAGCAATCGCCAGAACAATGGCAGAAGATGTACGGTAGATGCTCCGGGAATGAAGTCTACCACATTGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGAAAGAGTTTTACATATGCCTCTTTCCATGCACACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687-15-18,15-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=FE(34.0=100)
A:
NA
C2:
PF0349313=BK_channel_a=FE(47.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGCAACATCTACACTT
R:
TTCCCGGAGCATCTACCGTAC
Band lengths:
110-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)