HsaALTA0004629-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000134539 | KLRD1
Description
killer cell lectin like receptor D1 [Source:HGNC Symbol;Acc:HGNC:6378]
Coordinates
chr12:10311464-10313513:+
Coord C1 exon
chr12:10311464-10311615
Coord A exon
chr12:10313410-10313463
Coord C2 exon
chr12:10313464-10313513
Length
54 bp
Sequences
Splice sites
5' ss Seq
CTGGCATGT
5' ss Score
0.38
3' ss Seq
TTGTCTTTTACTTGAAGCAGGAT
3' ss Score
4.01
Exon sequences
Seq C1 exon
ACTCTGACTGCTGTTCTTGCCAAGAAAAATGGGTTGGGTACCGGTGCAACTGTTACTTCATTTCCAGTGAACAGAAAACTTGGAACGAAAGTCGGCATCTCTGTGCTTCTCAGAAATCCAGCCTGCTTCAGCTTCAAAACACAGATGAACTG
Seq A exon
GATTTTATGAGCTCCAGTCAACAATTTTACTGGATTGGACTCTCTTACAGTGAG
Seq C2 exon
GAGCACACCGCCTGGTTGTGGGAGAATGGCTCTGCACTCTCCCAGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134539-64-15,64-14,64-13,64-12-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059667=Chordopox_A33R=PD(51.6=92.3)
A:
NA
C2:
PF0005916=Lectin_C=FE(34.3=100)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACCGGTGCAACTGTTACT
R:
GAGCCATTCTCCCACAACCAG
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains