HsaALTA0005395-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105464032-105464567:+
Coord C1 exon
chr14:105464032-105464147
Coord A exon
NA
Coord C2 exon
chr14:105464463-105464567
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GGGGTCCCCCTAACATGCAGTGT
3' ss Score
3.81
Exon sequences
Seq C1 exon
TAACAAGCCAAATCCGAACCAAATCAGCGTCAACAACGTCAAGGCCGGTGTGGTGAACGGCACGGGGGCGCCGGGCCAGAGCCCTGGGGCTGGCCGGGCCTGCGAGAGCTGTTACA
Seq A exon
NA
Seq C2 exon
TGTCGTCTCTGCGCATCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCAGGACCAAACCGCAGTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-35-48,35-47,35-46-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (disopred):
C1=0.995 A=NA C2=0.435
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAACCAAATCAGCGTCAA
R:
ATGTCCAACAAGATGCGCAGA
Band lengths:
132-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains