HsaALTA0005859-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000196358 | NTNG2
Description
netrin G2 [Source:HGNC Symbol;Acc:14288]
Coordinates
chr9:135040914-135041500:+
Coord C1 exon
chr9:135040914-135041003
Coord A exon
chr9:135041366-135041415
Coord C2 exon
chr9:135041416-135041500
Length
50 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGG
5' ss Score
7.37
3' ss Seq
CCCTCTTTAATTTGTTGCAGGTG
3' ss Score
11.1
Exon sequences
Seq C1 exon
ATTGTGCCTATGATTGGGGGGCTGTTTCTCAGTGCCTGGCTCTTCATGGTTGGCCAGCACGTGGAGCACTCTGTTCATCTGTACATATAG
Seq A exon
GTGTTGTTGCTAATGAGCTCTCTCTCTCTCCTCCCCTCTTACAATGAAAG
Seq C2 exon
ACAAGTCAGACCCCAGGTACCTGGATGGATTGAGAGCTGAGATCTCAGAAACTTCATAATAAGTTGCCGATGGCTACCAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196358-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGCCTGGCTCTTCATG
R:
CCATCGGCAACTTATTATGAAGTTT
Band lengths:
136-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)