HsaALTA0005923-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000122136 | OBP2A
Description
odorant binding protein 2A [Source:HGNC Symbol;Acc:HGNC:23380]
Coordinates
chr9:135547871-135548809:+
Coord C1 exon
chr9:135547871-135547981
Coord A exon
chr9:135548643-135548707
Coord C2 exon
chr9:135548708-135548809
Length
65 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCGTGGTCGTCTCCTTTTAGCAT
3' ss Score
8.18
Exon sequences
Seq C1 exon
ATGGGGGCAGGAAGCTCATATACCTGCAGGAGCTGCCCGGGACGGACGACTACGTCTTTTACTGCAAAGACCAGCGCCGTGGGGGCCTGCGCTACATGGGAAAGCTTGTGG
Seq A exon
CATCTGCTCCCTGCAGGGCCGTGCCGCTGTCCCCACCTTGGCTCACCTGGCCACCTCACCTGCAG
Seq C2 exon
GTAGGAATCCTAATACCAACCTGGAGGCCCTGGAAGAATTTAAGAAATTGGTGCAGCACAAGGGACTCTCGGAGGAGGACATTTTCATGCCCCTGCAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122136-3-5,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(34.9=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(24.5=100)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGAAGCTCATATACCTGC
R:
TCCCTTGTGCTGCACCAATTT
Band lengths:
171-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development