HsaALTA0006000-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD-binding domain containing 1 [Source:HGNC Symbol;Acc:25128]
Coordinates
chr3:16310633-16312578:+
Coord C1 exon
chr3:16310633-16310782
Coord A exon
NA
Coord C2 exon
chr3:16312452-16312578
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCAGTTTTCTGTTTGCCCAGAAA
3' ss Score
4.93
Exon sequences
Seq C1 exon
GAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGACTTCTAAG
Seq A exon
NA
Seq C2 exon
AAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-2-5,2-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF063668=FlhE=PU(65.2=75.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCAGTGTAATAGCAGGACCA
R:
ATCATAACAGCAGCACAGGCC
Band lengths:
118-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)