HsaALTA0006063-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]
Coordinates
chr14:73730919-73731434:+
Coord C1 exon
chr14:73730919-73731043
Coord A exon
chr14:73731264-73731295
Coord C2 exon
chr14:73731296-73731434
Length
32 bp
Sequences
Splice sites
5' ss Seq
TAGGTCTCT
5' ss Score
-3.33
3' ss Seq
CCACTCCCTTTTCCTCACAGCTC
3' ss Score
10.21
Exon sequences
Seq C1 exon
GCACAGGCTGCAGTTCGACGGATCCCTGATCATCCACCCCCTGCAGGCAGAGGACGCGGGCACCTACAGCTGTGGCAGCACCCGGCCAGGCCGCGACTCCCAGAAGATCCAACTTCGCATCATAG
Seq A exon
CTCACACCTTGTTTCTCCTGGCCTCATGACAG
Seq C2 exon
GGGGTGACATGGCCGTGCTGTCTGAGGCTGAGCTGAGCCGCTTCCCTCAGCCCAGGGACCCAGCTCAGGACTTTGGCCAAGCGGGGGCTGCTGGGCCCCTGGGGGCCATCCCCTCTTCACACCCACAGCCTGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767-25-28,25-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.840
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(48.8=93.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACTCCCAGAAGATCCAAC
R:
CTTGGCCAAAGTCCTGAGCTG
Band lengths:
114-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)