HsaALTA0006269-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000175287 | PHYHD1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:HGNC Symbol;Acc:23396]
Coordinates
chr9:131689317-131696067:+
Coord C1 exon
chr9:131689317-131689475
Coord A exon
chr9:131696006-131696060
Coord C2 exon
chr9:131696061-131696067
Length
55 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCCGCCTCCCTCTTTGCCAGGCC
3' ss Score
8.63
Exon sequences
Seq C1 exon
TTCCAACAGGATGGATTCCTGGTGCTGGAAGGATTCTTGTCTGCGGAAGAGTGTGTGGCCATGCAACAAAGGATTGGCGAGATAGTGGCTGAAATGGATGTTCCTCTCCACTGCCGCACAGAATTCTCCACCCAGGAAGAGGAGCAGCTTCGAGCCCAG
Seq A exon
GCCCAGCTCTGACCCCAGGATGCTGTCTCAGTCCTCTGATGTCCCCTTTCCACAG
Seq C2 exon
GGCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175287-5-12,5-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(36.6=98.1)
A:
NA
C2:
PF057218=PhyH=FE(17.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)