HsaALTA0006653-1/4 @ hg19
Alternative 3'ss
Gene
ENSG00000185686 | PRAME
Description
preferentially expressed antigen in melanoma [Source:HGNC Symbol;Acc:9336]
Coordinates
chr22:22899232-22900000:-
Coord C1 exon
chr22:22899965-22900000
Coord A exon
NA
Coord C2 exon
chr22:22899232-22899329
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
ATTTTGATTATTACTCTCAGACG
3' ss Score
4.28
Exon sequences
Seq C1 exon
CAACTTCGCGGTGTGGTGAACTCTCTGAGGAAAAAC
Seq A exon
NA
Seq C2 exon
ACGTGCGTGGCAACAAGTGACTGAGACCTAGAAATCCAAGCGTTGGAGGTCCTGAGGCCAGCCTAAGTCGCTTCAAAATGGAACGAAGGCGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185686-2-10,2-9,2-8,2-7-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGTGGTGAACTCTCTGAG
R:
TTTGAAGCGACTTAGGCTGGC
Band lengths:
105-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)