HsaALTA0006653-3/5 @ hg38
Alternative 3'ss
Gene
ENSG00000185686 | PRAME
Description
preferentially expressed antigen in melanoma [Source:HGNC Symbol;Acc:HGNC:9336]
Coordinates
chr22:22556812-22557580:-
Coord C1 exon
chr22:22557545-22557580
Coord A exon
chr22:22556893-22556930
Coord C2 exon
chr22:22556812-22556892
Length
38 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
ATGTATTCTTCTTTTTGGAGCAT
3' ss Score
1.13
Exon sequences
Seq C1 exon
CAACTTCGCGGTGTGGTGAACTCTCTGAGGAAAAAC
Seq A exon
CATTTTGATTATTACTCTCAGACGTGCGTGGCAACAAG
Seq C2 exon
TGACTGAGACCTAGAAATCCAAGCGTTGGAGGTCCTGAGGCCAGCCTAAGTCGCTTCAAAATGGAACGAAGGCGTTTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185686-4-10,4-9,4-8,4-7,4-6-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTTCGCGGTGTGGTGAA
R:
GCCTTCGTTCCATTTTGAAGCG
Band lengths:
109-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains