HsaALTA0006732-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000185198 | PRSS57
Description
protease, serine 57 [Source:HGNC Symbol;Acc:HGNC:31397]
Coordinates
chr19:694814-695498:-
Coord C1 exon
chr19:695352-695498
Coord A exon
chr19:694968-694970
Coord C2 exon
chr19:694814-694967
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
3' ss Seq
GACTCAGGCCGTCCCTCCAGCAG
3' ss Score
3.75
Exon sequences
Seq C1 exon
GGCCGTTGGCTGAGGGTGGGAGCCACGGCCCGAAGACCTCTGCGGGGAGACGCCAGCCTGCGTCTGCCATGGGGCTCGGGTTGAGGGGCTGGGGACGTCCTCTGCTGACTGTGGCCACCGCCCTGATGCTGCCCGTGAAGCCCCCCG
Seq A exon
CAG
Seq C2 exon
GCTCCTGGGGGGCCCAGATCATCGGGGGCCACGAGGTGACCCCCCACTCCAGGCCCTACATGGCATCCGTGCGCTTCGGGGGCCAACATCACTGCGGAGGCTTCCTGCTGCGAGCCCGCTGGGTGGTCTCGGCCGCCCACTGCTTCAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185198-0-3,0-2,0-1,0-0-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(20.0=86.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGATGCTGCCCGTGAAG
R:
GCACGGATGCCATGTAGGG
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains