HsaALTA0007068-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000155636 | RBM45
Description
RNA binding motif protein 45 [Source:HGNC Symbol;Acc:HGNC:24468]
Coordinates
chr2:178120287-178121359:+
Coord C1 exon
chr2:178120287-178120409
Coord A exon
chr2:178121180-178121201
Coord C2 exon
chr2:178121202-178121359
Length
22 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTTTTTTATATTGTCGGAGAAC
3' ss Score
-3.19
Exon sequences
Seq C1 exon
GTTTTAGAGCAATCTTGGCTGAACCTAAAAATAAAGCATCTGAATCCTCTGAACAAGATTATTATAGTAATATGAGGCAAGAAGCTTTGGGACATGAACCTAGAGTAAATATGTTTCCATTTG
Seq A exon
AACAACAATCTGAATTTTCAAG
Seq C2 exon
TTTTGACAAGAATGATAGCCGAGGCCAGGAAGCAATCTCCAAACGCTTGTCAGTTGTATCAAGAGTTCCTTTCACTGAAGAACAGCTTTTCAGCATTTTTGATATAGTACCAGGATTGGAATATTGTGAAGTTCAACGAGATCCTTATTCAAATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155636-6-8,6-7,6-6-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.070
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(2.7=4.8)
A:
NA
C2:
PF0007617=RRM_1=PU(49.2=49.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAAGAAGCTTTGGGACA
R:
TGACAAGCGTTTGGAGATTGCT
Band lengths:
102-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains