HsaALTA0007084-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:29434]
Coordinates
chr1:173907909-173910518:-
Coord C1 exon
chr1:173910403-173910518
Coord A exon
chr1:173908010-173908012
Coord C2 exon
chr1:173907909-173908009
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCAAAATTTTAAAATGTCAGCAG
3' ss Score
-0.44
Exon sequences
Seq C1 exon
GAAAACCAGTGTTCTCTGGACATGAAAAGCAAACTGAATACAAGTAAACAAGCAGAAAATGGACAACCAGAACCACAAAACAAGGTTCCGGCTGAGGACCTTACATTGACATTCAG
Seq A exon
CAG
Seq C2 exon
TGATGTACCAAATGGATCAGCCTTGACACAAGAGAATATCAGCCTCCTATCAAACAAGACCAGCTCTCTGAACCTGTCAGAGGACCCTGAGGGAGGAGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870-22-27,22-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGCTGAGGACCTTACATTG
R:
TGACAGGTTCAGAGAGCTGGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)