HsaALTA0007102-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000214022 | REPIN1
Description
replication initiator 1 [Source:HGNC Symbol;Acc:17922]
Coordinates
chr7:150065879-150066957:+
Coord C1 exon
chr7:150065879-150066030
Coord A exon
NA
Coord C2 exon
chr7:150066831-150066957
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
GGGTGTCTTTATTACTGCAGTTT
3' ss Score
5.33
Exon sequences
Seq C1 exon
CCCGGCGGGGGGAGGTTGGGGACGGGCCTGGCAGTTGTGAACTCGAACCTGCCGCTGTCGCCGCGGCGGGGCGGGGAGCGAGAGTGGGCCGCGGAGGCCGGCCTTCGGGCTCCATGGACGGGCGCCGCGTCCCTGCACAGCCCGCCGCAGAG
Seq A exon
NA
Seq C2 exon
TTTTCTCTAACACCTGGGGGCTACCGGAGTGTGGGCCGAAGCAGGCGCTGCAGCCGCGGAAGTATCCCCAGGAACATCCCCAAGAGGAGCTGGAAAAAGCCTCATCCCCAGCTCTGCAGTCTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214022-2-17,2-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.498
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTTGTGAACTCGAACC
R:
CTGCTTCGGCCCACACTC
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)