HsaALTA0007115-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000148300 | REXO4
Description
REX4, RNA exonuclease 4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:12820]
Coordinates
chr9:136279785-136281020:-
Coord C1 exon
chr9:136280782-136281020
Coord A exon
NA
Coord C2 exon
chr9:136279785-136279953
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CAGGGGCTCTGTTCCTTCAGGTT
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATACTCTGCACAGTATCTCAGTGCAGACATTCCTGTCTTAACACACAGGACCAGTCAAATTCCCGTGGGCAGCCCCAGGGTTCTGTGGGATTTCTTGAACACCAACTCTTCTTCCTTCTCCCAAGAAAGAAAAGCAAAATAAGTGAATGGAAGGGATGTGTGCTATAGGGAAACTTTGGAGTGTTTTCTAATTCATCCAAGAAAGTCAGCCCTTCAGTTCTTTACCTATCACAGAACAG
Seq A exon
NA
Seq C2 exon
GTTCCAAGATGGACAGGAGGGCGCCAGTACCTCGCACCAAGGCCAGTGGAACAGAGCACAATAAGAAAGGAACCAAGGAAAGGACAAATGGTGATATTGTTCCAGAACGAGGGGACATCGAGCATAAGAAGCGGAAAGCTAAGGAGGCAGCCCCAGCCCCACCCACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148300-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.955
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(20.2=40.4)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGTCAAATTCCCGTGGG
R:
ATTGTGCTCTGTTCCACTGGC
Band lengths:
253-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)