HsaALTA0007393-3/4 @ hg19
Alternative 3'ss
Gene
ENSG00000137154 | RPS6
Description
ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]
Coordinates
chr9:19378398-19378916:-
Coord C1 exon
chr9:19378706-19378916
Coord A exon
chr9:19378452-19378507
Coord C2 exon
chr9:19378398-19378451
Length
56 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
ACTGTTTCTTCTAAGGAGAGAAG
3' ss Score
-5.61
Exon sequences
Seq C1 exon
GGTTATGTGGTCCGAATCAGTGGTGGGAACGACAAACAAGGTTTCCCCATGAAGCAGGGTGTCTTGACCCATGGCCGTGTCCGCCTGCTACTGAGTAAGGGGCATTCCTGTTACAGACCAAGGAGAACTGGAGAAAGAAAGAGAAAATCAGTTCGTGGTTGCATTGTGGATGCAAATCTGAGCGTTCTCAACTTGGTTATTGTAAAAAAAG
Seq A exon
AAGGATATTCCTGGACTGACTGATACTACAGTGCCTCGCCGCCTGGGCCCCAAAAG
Seq C2 exon
AGCTAGCAGAATCCGCAAACTTTTCAATCTCTCTAAAGAAGATGATGTCCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137154-9-15,9-14,9-13,9-12-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0109214=Ribosomal_S6e=FE(72.9=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCATTCCTGTTACAGACC
R:
AGTTTGCGGATTCTGCTAGCT
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)