HsaALTA0007500-1/3 @ hg19
Alternative 3'ss
Gene
ENSG00000100241 | SBF1
Description
SET binding factor 1 [Source:HGNC Symbol;Acc:10542]
Coordinates
chr22:50906000-50906352:-
Coord C1 exon
chr22:50906215-50906352
Coord A exon
NA
Coord C2 exon
chr22:50906000-50906040
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GACCCACCTGTCTCCCACAGCAC
3' ss Score
8.82
Exon sequences
Seq C1 exon
TTTTGCCAGCCCAGCGGGTGGCAGCTGTGTCCCGAGAGGAATCCACCGACCTTCTTTGTTGCTGTCCTCACCGACATCAACTCCGAGCGCCACTACTGCGCCTGCTTGACCTTCTGGGAGCCAGCGGAGCCTTCACAG
Seq A exon
NA
Seq C2 exon
CACCTGCCCCATCTGCCCAGCTGTTTGCACCGAAGACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100241-3-7,3-6,3-5-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.551
Domain overlap (PFAM):
C1:
PF0345613=uDENN=PD(60.3=82.6)
A:
NA
C2:
PF0214116=DENN=PU(9.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTGTGTCCCGAGAG
R:
AGCGTCTTCGGTGCAAACAG
Band lengths:
159-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)