HsaALTA0007589-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000071537 | SEL1L
Description
sel-1 suppressor of lin-12-like (C. elegans) [Source:HGNC Symbol;Acc:10717]
Coordinates
chr14:81972418-81993308:-
Coord C1 exon
chr14:81993077-81993308
Coord A exon
chr14:81972523-81972585
Coord C2 exon
chr14:81972418-81972522
Length
63 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
3' ss Seq
TTTATTTCTTGTCATTCCAGCTT
3' ss Score
7.25
Exon sequences
Seq C1 exon
ACTACTTTGACATCAGATGAGTCAGTAAAGGACCATACTACTGCAGGCAGAGTAGTTGCTGGTCAAATATTTCTTGATTCAGAAGAATCTGAATTAGAATCCTCTATTCAAGAAGAGGAAGACAGCCTCAAGAGCCAAGAGGGGGAAAGTGTCACAGAAGATATCAGCTTTCTAGAGTCTCCAAATCCAGAAAACAAGGACTATGAAGAGCCAAAGAAAGTACGGAAACCAG
Seq A exon
CTTTGACCGCCATTGAAGGCACAGCACATGGGGAGCCCTGCCACTTCCCTTTTCTTTTCCTAG
Seq C2 exon
ATAAGGAGTATGATGAATGTACATCAGATGGGAGGGAAGATGGCAGACTGTGGTGTGCTACAACCTATGACTACAAAGCAGATGAAAAGTGGGGCTTTTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000071537-3-4,3-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.821 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(2.9=1.3)
A:
NA
C2:
PF0004014=fn2=PD(94.3=91.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCAAGAGGGGGAAAGT
R:
GCCATCTTCCCTCCCATCTGA
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)