HsaALTA0007593-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000174175 | SELP
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:10721]
Coordinates
chr1:169558599-169559440:-
Coord C1 exon
chr1:169559385-169559440
Coord A exon
chr1:169558700-169558803
Coord C2 exon
chr1:169558599-169558699
Length
104 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCTTTGGTCTCATTTCCAGAGA
3' ss Score
8.97
Exon sequences
Seq C1 exon
CCACCTAGGAACATATGGAGTTTTTACAAACGCTGCATTTGACCCGAGTCCTTAAG
Seq A exon
AGACCTGTCCTTTTCCTGGTCTCCTCATTCAGCCTCCATATGATCCTGTTGTGAACATCAAGTTTCCTGCTACACTGGACTTAACTATAATGCATTTGCTGCAG
Seq C2 exon
GTTTCCATAAACACCCATGAATCAAAGACATGGAATTACCTTAGATTAGCTCTGGACCAGCCTGTTGGACCCGCTCTGGACCAACCCTGTTTCCTGAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174175-17-20,17-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTAGGAACATATGGAGTTT
R:
CTCAGGAAACAGGGTTGGTCC
Band lengths:
154-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)