HsaALTA0007738-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr2:73053351-73058596:-
Coord C1 exon
chr2:73058528-73058596
Coord A exon
chr2:73053548-73053551
Coord C2 exon
chr2:73053351-73053547
Length
4 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TTCACTGTAATTTTTCTTAGGAA
3' ss Score
8.3
Exon sequences
Seq C1 exon
ACGTCCTTCTATGGCCGCTTCAGGCACTTCTTGGATATCATCGACCCTCGCACACTCTTTGTCACTGAG
Seq A exon
GAAG
Seq C2 exon
AAGGCTGTCTTTGTTCTAAGAATGCCTTGAACAAAGCTTCAGAGGAGGAGGTTGCCCTGCTTGACAGAGGAGAAGAATGGTGCATTTTGATCCTAAATGGAGAAAGGAGAGGGAAGGAAGAGGAGGAAAAAAACAGCGGGAAGGAGAGCATGATACTGAGATGAGCTGAAAGACCAATAAAGAAATGCCACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040-7-20,7-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(34.9=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATATCATCGACCCTCGCA
R:
GCAACCTCCTCCTCTGAAGCT
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains