HsaALTA0007936-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr4:25662498-25662842:+
Coord C1 exon
chr4:25662498-25662612
Coord A exon
chr4:25662705-25662707
Coord C2 exon
chr4:25662708-25662842
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACCCCTTTTGCTTGTTTCAGCAG
3' ss Score
8.49
Exon sequences
Seq C1 exon
ACCATGGCTCCCTGGCCTGAATTGGGAGATGCCCAGCCCAACCCCGATAAGTACCTCGAAGGGGCCGCAGGTCAGCAGCCCACTGCCCCTGATAAAAGCAAAGAGACCAACAAAA
Seq A exon
CAG
Seq C2 exon
ATAACACTGAGGCACCTGTAACCAAGATTGAACTTCTGCCGTCCTACTCCACGGCTACACTGATAGATGAGCCCACTGAGGTGGATGACCCCTGGAACCTACCCACTCTTCAGGACTCGGGGATCAAGTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-6-7,6-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGCCCCTGATAAAAGC
R:
AGTGTAGCCGTGGAGTAGGAC
Band lengths:
98-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development