HsaALTA0007987-4/4 @ hg19
Alternative 3'ss
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4, anion exchanger, member 3 [Source:HGNC Symbol;Acc:11029]
Coordinates
chr2:220497996-220498697:+
Coord C1 exon
chr2:220497996-220498179
Coord A exon
chr2:220498577-220498604
Coord C2 exon
chr2:220498605-220498697
Length
28 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GCCTCCGGTCTGGGTCCCAGCCC
3' ss Score
5.12
Exon sequences
Seq C1 exon
CCATCCCAACGATGACAAGGACAGTGGCTTCTTTCCCCGAAACCCATCGAGCTCCAGCATGAACTCGGTTCTGGGGAATCATCACCCAACTCCCAGCCATGGCCCTGATGGGGCGGTGCCTACCATGGCTGATGACCTGGGGGAGCCAGCCCCACTCTGGCCACATGACCCTGACGCCAAGGAG
Seq A exon
CCCTATTCCAGTTCTGCGTCCTCAGAAG
Seq C2 exon
CCCCTCCACATGCCTGGGGGAGATGGTCACCGGGGGAAAAGCCTGAAGCTGCTGGAGAAGATCCCTGAAGATGCTGAGGCCACGGTTGTGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-14-23,14-22,14-21,14-20-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=NA C2=0.668
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(41.7=88.7)
A:
NA
C2:
PF075658=Band_3_cyto=FE(12.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATGGCTGATGACCTGGG
R:
CTTCTCCAGCAGCTTCAGGC
Band lengths:
124-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)