HsaALTA0008259-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160408 | ST6GALNAC6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
Coordinates
chr9:127886684-127887591:-
Coord C1 exon
chr9:127887484-127887591
Coord A exon
chr9:127886785-127886788
Coord C2 exon
chr9:127886684-127886784
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCCGTCTGCTCTGTCCCAGCCA
3' ss Score
6.52
Exon sequences
Seq C1 exon
GGAGAAGTCTCATTCGTGGTTGAGCACAGGCTGGTTTACCATGGTGATCGCGGTGGAGTTGTGTGACCACGTGCATGTCTATGGCATGGTCCCCCCCAACTACTGCAG
Seq A exon
CCAG
Seq C2 exon
CGGCCCCGCCTCCAGCGCATGCCCTACCACTACTACGAGCCCAAGGGGCCGGACGAATGTGTCACCTACATCCAGAATGAGCACAGTCGCAAGGGCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160408-30-28,30-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.291
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(13.3=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(1.8=3.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGCATGTCTATGGCATGGT
R:
GTAGGTGACACATTCGTCCGG
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development