HsaALTA0008374-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000148248 | SURF4
Description
surfeit 4 [Source:HGNC Symbol;Acc:11476]
Coordinates
chr9:136234135-136242970:-
Coord C1 exon
chr9:136242793-136242970
Coord A exon
NA
Coord C2 exon
chr9:136234135-136234321
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
GGGTTTCTGTGGCCCTGCAGTTC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GGAGCCGCAGCCGACGCGGAGCGAGGCCGGCCGCCGGGCACTTCCTGTGGAGGCCGCAGCGGGTGCGGGCGCCGACGGGCGAGAGCCAGCGAGCGAGCGAGCGAGCCGAGCCGAGCCTCCCGCCGTCGCCATGGGCCAGAACGACCTGATGGGCACGGCCGAGGACTTCGCCGACCAG
Seq A exon
NA
Seq C2 exon
TTCCTCCGTGTCACAAAGCAGTACCTGCCCCACGTGGCGCGCCTCTGTCTGATCAGCACCTTCCTGGAGGACGGCATCCGTATGTGGTTCCAGTGGAGCGAGCAGCGCGACTACATCGACACCACCTGGAACTGCGGCTACCTGCTGGCCTCGTCCTTCGTCTTCCTCAACTTGCTGGGACAGCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148248-0-3,0-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0207710=SURF4=PU(10.0=75.0)
A:
NA
C2:
PF0207710=SURF4=FE(34.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACGACCTGATGGGCAC
R:
CAGTTCCAGGTGGTGTCGATG
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)