HsaALTA0008743-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000244187 | TMEM141
Description
transmembrane protein 141 [Source:HGNC Symbol;Acc:28211]
Coordinates
chr9:139685807-139686229:+
Coord C1 exon
chr9:139685807-139685876
Coord A exon
chr9:139686078-139686162
Coord C2 exon
chr9:139686163-139686229
Length
85 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
AGGGTCTCACTCCTCCACAGCCA
3' ss Score
6.19
Exon sequences
Seq C1 exon
CCGAGCCCTGCCAACCATGGTGAACTTGGGTCTGTCCCGGGTGGACGACGCCGTGGCTGCCAAGCACCCG
Seq A exon
CCAGGGTGTGCCCAGAGGAGGGACAGGAGAGGCGGTGAAGGAAGAGGGCAGGGGATCGAGCCTTCACCCGCCTCTGCCACCCCAG
Seq C2 exon
GGACTCGGGGAGTATGCCGCATGCCAGTCACACGCCTTCATGAAGGGCGTTTTCACCTTCGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000244187-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151101=TMEM141=PU(16.7=88.9)
A:
NA
C2:
PF151101=TMEM141=FE(22.9=100),PF140121=DUF4229=PU(14.9=30.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCTGCCAACCATG
R:
TGTGACGAAGGTGAAAACGCC
Band lengths:
135-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)