HsaALTA0008827-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000137648 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:HGNC:11878]
Coordinates
chr11:118077012-118094855:+
Coord C1 exon
chr11:118077012-118077305
Coord A exon
NA
Coord C2 exon
chr11:118094822-118094855
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TGTTTTTCCTTCAATTACAGGAT
3' ss Score
10.51
Exon sequences
Seq C1 exon
ATCATTCCAGTTTGGCAACTTCACTTGTAGGGCTGTTTTAATCAAGCTGCCCAAAGTCCCCCAATCACTCCTGGAATACACAGAGAGAGGCAGCAGCTTGCTCAGCGGACAAGGATGCTGGGCGTGAGGGACCAAGGCCTGCCCTGCACTCGGGCCTCCTCCAGCCAGTGCTGACCAGGGACTTCTGACCTGCTGGCCAGCCAGGACCTGTGTGGGGAGGCCCTCCTGCTGCCTTGGGGTGACAATCTCAGCTCCAGGCTACAGGGAGACCGGGAGGATCACAGAGCCAGCATG
Seq A exon
NA
Seq C2 exon
GATCCTGACAGTGATCAACCTCTGAACAGCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137648-0-3,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGGGTGACAATCTCAGC
R:
CGAGGCTGTTCAGAGGTTGAT
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development