HsaALTA0008828-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000137648 | TMPRSS4
Description
transmembrane protease, serine 4 [Source:HGNC Symbol;Acc:11878]
Coordinates
chr11:117975406-117978590:+
Coord C1 exon
chr11:117975406-117975535
Coord A exon
chr11:117978489-117978503
Coord C2 exon
chr11:117978504-117978590
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
CTCCCTCTTGATGTGAGCAGCAA
3' ss Score
3.59
Exon sequences
Seq C1 exon
TCCGCCTCTCCAAGGACCGATCCACACTGCAGGTGCTGGACTCGGCCACAGGGAACTGGTTCTCTGCCTGTTTCGACAACTTCACAGAAGCTCTCGCTGAGACAGCCTGTAGGCAGATGGGCTACAGCAG
Seq A exon
CAAACCCACTTTCAG
Seq C2 exon
AGCTGTGGAGATTGGCCCAGACCAGGATCTGGATGTTGTTGAAATCACAGAAAACAGCCAGGAGCTTCGCATGCGGAACTCAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137648-8-8,8-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.069
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PU(44.3=88.6),PF139921=YecR=PU(64.2=97.7)
A:
NA
C2:
PF154941=SRCR_2=FE(33.0=100),PF139921=YecR=PD(34.3=76.7)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTTCTCTGCCTGTTTCG
R:
ATCCTGGTCTGGGCCAATCTC
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)