HsaALTA0008919-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000172236 | TPSAB1
Description
tryptase alpha/beta 1 [Source:HGNC Symbol;Acc:12019]
Coordinates
chr16:1291154-1291700:+
Coord C1 exon
chr16:1291154-1291325
Coord A exon
chr16:1291435-1291461
Coord C2 exon
chr16:1291462-1291700
Length
27 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TGGGATCCTCCGCTGCCCAGGGA
3' ss Score
4.4
Exon sequences
Seq C1 exon
CCCCAGGCCAGGCCCTGCAGCGAGTGGGCATCGTCGGGGGTCAGGAGGCCCCCAGGAGCAAGTGGCCCTGGCAGGTGAGCCTGAGAGTCCACGGCCCATACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCCCCAGTGGGTGCTGACCGCAGCGCACTGCGTGGGACC
Seq A exon
GGACGTCAAGGATCTGGCCGCCCTCAG
Seq C2 exon
GGTGCAACTGCGGGAGCAGCACCTCTACTACCAGGACCAGCTGCTGCCGGTCAGCAGGATCATCGTGCACCCACAGTTCTACACCGCCCAGATCGGAGCGGACATCGCCCTGCTGGAGCTGGAGGAGCCGGTGAACGTCTCCAGCCACGTCCACACGGTCACCCTGCCCCCTGCCTCAGAGACCTTCCCCCCGGGGATGCCGTGCTGGGTCACTGGCTGGGGCGATGTGGACAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172236-2-3,2-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.8=81.0)
A:
NA
C2:
PF0008921=Trypsin=FE(39.2=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCATACTGGATGCACTTC
R:
CCTGGTAGTAGAGGTGCTGCT
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)